J4_8AKN_005

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8AKN|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AKN_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1048

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8AKN|1|a|C|268
8AKN|1|a|C|269
*
8AKN|1|a|G|370
8AKN|1|a|A|371
8AKN|1|a|G|372
8AKN|1|a|U|373
8AKN|1|a|A|374
8AKN|1|a|G|375
*
8AKN|1|a|U|399
8AKN|1|a|G|400
8AKN|1|a|A|401
8AKN|1|a|A|402
8AKN|1|a|U|403
8AKN|1|a|A|404
8AKN|1|a|U|405
8AKN|1|a|G|406
*
8AKN|1|a|C|421
8AKN|1|a|A|422
8AKN|1|a|A|423
8AKN|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28