J4_8AKN_008

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8AKN|1|a|G|1271, 8AKN|1|a|A|1272, 8AKN|1|a|U|1273, 8AKN|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AKN_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0507

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8AKN|1|a|C|1270
8AKN|1|a|G|1271
8AKN|1|a|A|1272
8AKN|1|a|U|1273
8AKN|1|a|A|1274
8AKN|1|a|A|1275
8AKN|1|a|A|1276
*
8AKN|1|a|U|1294
8AKN|1|a|C|1295
*
8AKN|1|a|G|1645
8AKN|1|a|C|1646
8AKN|1|a|U|1647
8AKN|1|a|U|1648
*
8AKN|1|a|A|2009
8AKN|1|a|G|2010

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32