J4_8AM9_005

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8AM9|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AM9_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1077

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8AM9|1|a|C|268
8AM9|1|a|C|269
*
8AM9|1|a|G|370
8AM9|1|a|A|371
8AM9|1|a|G|372
8AM9|1|a|U|373
8AM9|1|a|A|374
8AM9|1|a|G|375
*
8AM9|1|a|U|399
8AM9|1|a|G|400
8AM9|1|a|A|401
8AM9|1|a|A|402
8AM9|1|a|U|403
8AM9|1|a|A|404
8AM9|1|a|U|405
8AM9|1|a|G|406
*
8AM9|1|a|C|421
8AM9|1|a|A|422
8AM9|1|a|A|423
8AM9|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28