J4_8AM9_016
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 8AM9|1|B|C|183, 8AM9|1|B|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AM9_016 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1267
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8AM9|1|B|G|142
8AM9|1|B|A|143
8AM9|1|B|G|144
*
8AM9|1|B|C|178
8AM9|1|B|A|179
8AM9|1|B|U|180
8AM9|1|B|A|181
8AM9|1|B|A|182
8AM9|1|B|C|183
8AM9|1|B|G|184
*
8AM9|1|B|C|193
8AM9|1|B|C|194
8AM9|1|B|A|195
8AM9|1|B|A|196
8AM9|1|B|A|197
8AM9|1|B|G|198
*
8AM9|1|B|U|219
8AM9|1|B|G|220
8AM9|1|B|C|221
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain U
- 30S ribosomal protein S20
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