J4_8ANA_001

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ANA|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ANA_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1213

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8ANA|1|a|C|268
8ANA|1|a|C|269
*
8ANA|1|a|G|370
8ANA|1|a|A|371
8ANA|1|a|G|372
8ANA|1|a|U|373
8ANA|1|a|A|374
8ANA|1|a|G|375
*
8ANA|1|a|U|399
8ANA|1|a|G|400
8ANA|1|a|A|401
8ANA|1|a|A|402
8ANA|1|a|U|403
8ANA|1|a|A|404
8ANA|1|a|U|405
8ANA|1|a|G|406
*
8ANA|1|a|C|421
8ANA|1|a|A|422
8ANA|1|a|A|423
8ANA|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28