J4_8AYE_001

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8AYE|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AYE_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1611

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8AYE|1|A|G|115
8AYE|1|A|A|116
8AYE|1|A|G|117
8AYE|1|A|U|118
8AYE|1|A|A|119
8AYE|1|A|A|120
8AYE|1|A|U|121
8AYE|1|A|G|122
*
8AYE|1|A|U|239
8AYE|1|A|G|240
*
8AYE|1|A|C|286
8AYE|1|A|U|287
8AYE|1|A|A|288
8AYE|1|A|G|289
*
8AYE|1|A|C|311
8AYE|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17