J4_8AYE_002

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8AYE|1|A|C|183, 8AYE|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AYE_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0967

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8AYE|1|A|G|142
8AYE|1|A|A|143
8AYE|1|A|G|144
*
8AYE|1|A|C|178
8AYE|1|A|A|179
8AYE|1|A|U|180
8AYE|1|A|A|181
8AYE|1|A|A|182
8AYE|1|A|C|183
8AYE|1|A|G|184
*
8AYE|1|A|C|193
8AYE|1|A|C|194
8AYE|1|A|A|195
8AYE|1|A|A|196
8AYE|1|A|A|197
8AYE|1|A|G|198
*
8AYE|1|A|U|219
8AYE|1|A|G|220
8AYE|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20