J4_8AYE_005

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8AYE|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AYE_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1335

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8AYE|1|a|C|268
8AYE|1|a|C|269
*
8AYE|1|a|G|370
8AYE|1|a|A|371
8AYE|1|a|G|372
8AYE|1|a|U|373
8AYE|1|a|A|374
8AYE|1|a|G|375
*
8AYE|1|a|U|399
8AYE|1|a|G|400
8AYE|1|a|A|401
8AYE|1|a|A|402
8AYE|1|a|U|403
8AYE|1|a|A|404
8AYE|1|a|U|405
8AYE|1|a|G|406
*
8AYE|1|a|C|421
8AYE|1|a|A|422
8AYE|1|a|A|423
8AYE|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28