J4_8B0X_004

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8B0X|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B0X_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1148

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8B0X|1|a|C|268
8B0X|1|a|C|269
*
8B0X|1|a|G|370
8B0X|1|a|A|371
8B0X|1|a|G|372
8B0X|1|a|U|373
8B0X|1|a|A|374
8B0X|1|a|G|375
*
8B0X|1|a|U|399
8B0X|1|a|G|400
8B0X|1|a|A|401
8B0X|1|a|A|402
8B0X|1|a|U|403
8B0X|1|a|A|404
8B0X|1|a|U|405
8B0X|1|a|G|406
*
8B0X|1|a|C|421
8B0X|1|a|A|422
8B0X|1|a|A|423
8B0X|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28