J4_8B2L_013
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAU(PSU)AAAUC*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8B2L|1|h1|G|363
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_013 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.2084
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|C|100
8B2L|1|h1|A|101
8B2L|1|h1|U|102
8B2L|1|h1|PSU|103
8B2L|1|h1|A|104
8B2L|1|h1|A|105
8B2L|1|h1|A|106
8B2L|1|h1|U|107
8B2L|1|h1|C|108
*
8B2L|1|h1|G|311
8B2L|1|h1|C|312
8B2L|1|h1|C|313
*
8B2L|1|h1|G|361
8B2L|1|h1|PSU|362
8B2L|1|h1|G|363
8B2L|1|h1|A|364
8B2L|1|h1|C|365
*
8B2L|1|h1|G|387
8B2L|1|h1|G|388
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain P1
- 40S ribosomal protein S8
- Chain T1
- 40S ribosomal protein S23
- Chain X1
- 40S ribosomal protein S11-like
Coloring options: