J4_8B2L_015
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUAG*CGU*AAGGUCG*CU
- Length
- 16 nucleotides
- Bulged bases
- 8B2L|1|i2|U|8, 8B2L|1|i2|U|47, 8B2L|1|i2|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_015 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1619
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
8B2L|1|i2|A|7
8B2L|1|i2|U|8
8B2L|1|i2|A|9
8B2L|1|i2|G|10
*
8B2L|1|i2|C|25
8B2L|1|i2|G|26
8B2L|1|i2|U|27
*
8B2L|1|i2|A|43
8B2L|1|i2|A|44
8B2L|1|i2|G|45
8B2L|1|i2|G|46
8B2L|1|i2|U|47
8B2L|1|i2|C|48
8B2L|1|i2|G|49
*
8B2L|1|i2|C|65
8B2L|1|i2|U|66
Current chains
- Chain i2
- tRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain M1
- 40S ribosomal protein S30
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
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