J4_8B5L_002

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8B5L|1|5|C|216, 8B5L|1|5|C|217, 8B5L|1|5|A|218, 8B5L|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|C|196
8B5L|1|5|A|197
8B5L|1|5|A|198
8B5L|1|5|G|199
*
8B5L|1|5|C|215
8B5L|1|5|C|216
8B5L|1|5|C|217
8B5L|1|5|A|218
8B5L|1|5|G|219
8B5L|1|5|C|220
8B5L|1|5|C|221
8B5L|1|5|C|222
*
8B5L|1|5|G|226
8B5L|1|5|A|227
8B5L|1|5|C|228
*
8B5L|1|5|G|240
8B5L|1|5|G|241
8B5L|1|5|U|242
8B5L|1|5|A|243
8B5L|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

Ribosomal protein L26