J4_8B5L_003
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CC*GAGGGAG*UGUCGCCG*CACGGGG
- Length
- 24 nucleotides
- Bulged bases
- 8B5L|1|5|G|859, 8B5L|1|5|U|873, 8B5L|1|5|C|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|706
8B5L|1|5|C|707
*
8B5L|1|5|G|855
8B5L|1|5|A|856
8B5L|1|5|G|857
8B5L|1|5|G|858
8B5L|1|5|G|859
8B5L|1|5|A|860
8B5L|1|5|G|861
*
8B5L|1|5|U|871
8B5L|1|5|G|872
8B5L|1|5|U|873
8B5L|1|5|C|874
8B5L|1|5|G|875
8B5L|1|5|C|876
8B5L|1|5|C|877
8B5L|1|5|G|878
*
8B5L|1|5|C|1222
8B5L|1|5|A|1223
8B5L|1|5|C|1224
8B5L|1|5|G|1225
8B5L|1|5|G|1226
8B5L|1|5|G|1227
8B5L|1|5|G|1228
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7
- Chain e
- Ribosomal protein L32
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