J4_8B5L_010

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8B5L|1|5|A|3980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|C|3977
8B5L|1|5|U|3978
8B5L|1|5|A|3979
8B5L|1|5|A|3980
8B5L|1|5|G|3981
*
8B5L|1|5|U|4035
8B5L|1|5|U|4036
8B5L|1|5|G|4037
*
8B5L|1|5|C|4064
8B5L|1|5|C|4065
*
8B5L|1|5|G|4074
8B5L|1|5|G|4075
8B5L|1|5|G|4076

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

60S ribosomal protein L21

Chain o

60S ribosomal protein L36a-like