J4_8B6C_008
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B6C_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0902
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B6C|1|5|G|3366
8B6C|1|5|A|3367
8B6C|1|5|C|3368
8B6C|1|5|U|3369
8B6C|1|5|G|3370
*
8B6C|1|5|C|3382
8B6C|1|5|A|3383
8B6C|1|5|A|3384
8B6C|1|5|A|3385
8B6C|1|5|G|3386
*
8B6C|1|5|U|3422
8B6C|1|5|G|3423
8B6C|1|5|A|3424
8B6C|1|5|U|3425
8B6C|1|5|U|3426
*
8B6C|1|5|A|3553
8B6C|1|5|U|3554
8B6C|1|5|G|3555
8B6C|1|5|A|3556
8B6C|1|5|A2M|3557
8B6C|1|5|C|3558
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain n
- 60S ribosomal protein L41
- Chain p
- 60S ribosomal protein L37a
Coloring options: