J4_8B6C_012

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8B6C|1|5|U|4423

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B6C|1|5|G|4333
8B6C|1|5|U|4334
8B6C|1|5|A|4335
8B6C|1|5|A|4336
*
8B6C|1|5|OMU|4366
8B6C|1|5|C|4367
*
8B6C|1|5|G|4422
8B6C|1|5|U|4423
8B6C|1|5|G|4424
*
8B6C|1|5|C|4458
8B6C|1|5|G|4459
8B6C|1|5|C|4460
8B6C|1|5|C|4461

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

60S ribosomal protein L13a

Chain V

60S ribosomal protein L23