J4_8B7Y_002

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8B7Y|1|C|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B7Y_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1652

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8B7Y|1|C|G|142
8B7Y|1|C|A|143
8B7Y|1|C|G|144
*
8B7Y|1|C|C|178
8B7Y|1|C|A|179
8B7Y|1|C|U|180
8B7Y|1|C|A|181
8B7Y|1|C|A|182
8B7Y|1|C|C|183
8B7Y|1|C|G|184
*
8B7Y|1|C|C|193
8B7Y|1|C|C|194
8B7Y|1|C|A|195
8B7Y|1|C|A|196
8B7Y|1|C|A|197
8B7Y|1|C|G|198
*
8B7Y|1|C|U|219
8B7Y|1|C|G|220
8B7Y|1|C|C|221

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20