J4_8BF7_001

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BF7|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1253

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|C|268
8BF7|1|0|C|269
*
8BF7|1|0|G|370
8BF7|1|0|A|371
8BF7|1|0|G|372
8BF7|1|0|U|373
8BF7|1|0|A|374
8BF7|1|0|G|375
*
8BF7|1|0|U|399
8BF7|1|0|G|400
8BF7|1|0|A|401
8BF7|1|0|A|402
8BF7|1|0|U|403
8BF7|1|0|A|404
8BF7|1|0|U|405
8BF7|1|0|G|406
*
8BF7|1|0|C|421
8BF7|1|0|A|422
8BF7|1|0|A|423
8BF7|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28