J4_8BF7_004

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8BF7|1|0|G|1271, 8BF7|1|0|A|1272, 8BF7|1|0|U|1273, 8BF7|1|0|A|1275, 8BF7|1|0|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.137

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8BF7|1|0|C|1270
8BF7|1|0|G|1271
8BF7|1|0|A|1272
8BF7|1|0|U|1273
8BF7|1|0|A|1274
8BF7|1|0|A|1275
8BF7|1|0|A|1276
*
8BF7|1|0|U|1294
8BF7|1|0|C|1295
*
8BF7|1|0|G|1645
8BF7|1|0|C|1646
8BF7|1|0|U|1647
8BF7|1|0|U|1648
*
8BF7|1|0|A|2009
8BF7|1|0|G|2010

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32