J4_8BF7_011

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1202

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BF7|1|0|G|2643
8BF7|1|0|G|2644
8BF7|1|0|G|2645
8BF7|1|0|C|2646
*
8BF7|1|0|G|2674
8BF7|1|0|A|2675
8BF7|1|0|C|2676
*
8BF7|1|0|G|2731
8BF7|1|0|G|2732
8BF7|1|0|A|2733
8BF7|1|0|A|2734
8BF7|1|0|G|2735
*
8BF7|1|0|U|2769
8BF7|1|0|G|2770
8BF7|1|0|C|2771

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14