J4_8BF7_012

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8BF7|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2561

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BF7|1|2|G|115
8BF7|1|2|A|116
8BF7|1|2|G|117
8BF7|1|2|U|118
8BF7|1|2|A|119
8BF7|1|2|A|120
8BF7|1|2|U|121
8BF7|1|2|G|122
*
8BF7|1|2|U|239
8BF7|1|2|G|240
*
8BF7|1|2|C|286
8BF7|1|2|U|287
8BF7|1|2|A|288
8BF7|1|2|G|289
*
8BF7|1|2|C|311
8BF7|1|2|C|312

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17