3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
8BF7|1|2|C|183, 8BF7|1|2|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BF7_013 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.2267
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8BF7|1|2|G|142
8BF7|1|2|A|143
8BF7|1|2|G|144
*
8BF7|1|2|C|178
8BF7|1|2|A|179
8BF7|1|2|U|180
8BF7|1|2|A|181
8BF7|1|2|A|182
8BF7|1|2|C|183
8BF7|1|2|G|184
*
8BF7|1|2|C|193
8BF7|1|2|C|194
8BF7|1|2|A|195
8BF7|1|2|A|196
8BF7|1|2|A|197
8BF7|1|2|G|198
*
8BF7|1|2|U|219
8BF7|1|2|G|220
8BF7|1|2|C|221

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain x
30S ribosomal protein S20

Coloring options:


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