J4_8BGE_004

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8BGE|1|0|G|1271, 8BGE|1|0|A|1272, 8BGE|1|0|U|1273, 8BGE|1|0|A|1275, 8BGE|1|0|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGE_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1333

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8BGE|1|0|C|1270
8BGE|1|0|G|1271
8BGE|1|0|A|1272
8BGE|1|0|U|1273
8BGE|1|0|A|1274
8BGE|1|0|A|1275
8BGE|1|0|A|1276
*
8BGE|1|0|U|1294
8BGE|1|0|C|1295
*
8BGE|1|0|G|1645
8BGE|1|0|C|1646
8BGE|1|0|U|1647
8BGE|1|0|U|1648
*
8BGE|1|0|A|2009
8BGE|1|0|G|2010

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32