J4_8BGH_001

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BGH|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGH_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1181

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BGH|1|0|C|268
8BGH|1|0|C|269
*
8BGH|1|0|G|370
8BGH|1|0|A|371
8BGH|1|0|G|372
8BGH|1|0|U|373
8BGH|1|0|A|374
8BGH|1|0|G|375
*
8BGH|1|0|U|399
8BGH|1|0|G|400
8BGH|1|0|A|401
8BGH|1|0|A|402
8BGH|1|0|U|403
8BGH|1|0|A|404
8BGH|1|0|U|405
8BGH|1|0|G|406
*
8BGH|1|0|C|421
8BGH|1|0|A|422
8BGH|1|0|A|423
8BGH|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28