J4_8BGH_011

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGH_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.122

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BGH|1|0|G|2643
8BGH|1|0|G|2644
8BGH|1|0|G|2645
8BGH|1|0|C|2646
*
8BGH|1|0|G|2674
8BGH|1|0|A|2675
8BGH|1|0|C|2676
*
8BGH|1|0|G|2731
8BGH|1|0|G|2732
8BGH|1|0|A|2733
8BGH|1|0|A|2734
8BGH|1|0|G|2735
*
8BGH|1|0|U|2769
8BGH|1|0|G|2770
8BGH|1|0|C|2771

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14