J4_8BH4_001

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BH4|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1267

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BH4|1|0|C|268
8BH4|1|0|C|269
*
8BH4|1|0|G|370
8BH4|1|0|A|371
8BH4|1|0|G|372
8BH4|1|0|U|373
8BH4|1|0|A|374
8BH4|1|0|G|375
*
8BH4|1|0|U|399
8BH4|1|0|G|400
8BH4|1|0|A|401
8BH4|1|0|A|402
8BH4|1|0|U|403
8BH4|1|0|A|404
8BH4|1|0|U|405
8BH4|1|0|G|406
*
8BH4|1|0|C|421
8BH4|1|0|A|422
8BH4|1|0|A|423
8BH4|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28