3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
8BH4|1|0|G|1271, 8BH4|1|0|A|1272, 8BH4|1|0|U|1273, 8BH4|1|0|A|1275, 8BH4|1|0|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BH4_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1373
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

8BH4|1|0|C|1270
8BH4|1|0|G|1271
8BH4|1|0|A|1272
8BH4|1|0|U|1273
8BH4|1|0|A|1274
8BH4|1|0|A|1275
8BH4|1|0|A|1276
*
8BH4|1|0|U|1294
8BH4|1|0|C|1295
*
8BH4|1|0|G|1645
8BH4|1|0|C|1646
8BH4|1|0|U|1647
8BH4|1|0|U|1648
*
8BH4|1|0|A|2009
8BH4|1|0|G|2010

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain K
50S ribosomal protein L17
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4531 s
Application loaded.