J4_8BH4_012

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8BH4|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH4_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2968

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BH4|1|2|G|115
8BH4|1|2|A|116
8BH4|1|2|G|117
8BH4|1|2|U|118
8BH4|1|2|A|119
8BH4|1|2|A|120
8BH4|1|2|U|121
8BH4|1|2|G|122
*
8BH4|1|2|U|239
8BH4|1|2|G|240
*
8BH4|1|2|C|286
8BH4|1|2|U|287
8BH4|1|2|A|288
8BH4|1|2|G|289
*
8BH4|1|2|C|311
8BH4|1|2|C|312

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17