J4_8BH4_013

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8BH4|1|2|C|183, 8BH4|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH4_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2579

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BH4|1|2|G|142
8BH4|1|2|A|143
8BH4|1|2|G|144
*
8BH4|1|2|C|178
8BH4|1|2|A|179
8BH4|1|2|U|180
8BH4|1|2|A|181
8BH4|1|2|A|182
8BH4|1|2|C|183
8BH4|1|2|G|184
*
8BH4|1|2|C|193
8BH4|1|2|C|194
8BH4|1|2|A|195
8BH4|1|2|A|196
8BH4|1|2|A|197
8BH4|1|2|G|198
*
8BH4|1|2|U|219
8BH4|1|2|G|220
8BH4|1|2|C|221

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20