J4_8BH4_019

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BH4|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH4_019 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1633

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8BH4|1|0|C|1833
8BH4|1|0|U|1834
8BH4|1|0|G|1835
*
8BH4|1|0|C|1905
8BH4|1|0|G|1906
*
8BH4|1|0|C|1924
8BH4|1|0|C|1925
8BH4|1|0|U|1926
8BH4|1|0|A|1927
8BH4|1|0|A|1928
8BH4|1|0|G|1929
8BH4|1|0|G|1930
8BH4|1|0|U|1931
8BH4|1|0|A|1932
8BH4|1|0|G|1933
*
8BH4|1|0|C|1967
8BH4|1|0|G|1968
8BH4|1|0|A|1969
8BH4|1|0|A|1970
8BH4|1|0|U|1971
8BH4|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2