Loop J4_8BH7

3D structure

PDB id: 8BH7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.23 Å

Loop

Sequence: GACGGG*UUGUACACACCGCCCGUCAC*GAAGUCGUAACAAGGUAG*CUGGAU
Length: 50 nucleotides
Bulged bases: 8BH7|1|a|C|1413, 8BH7|1|a|C|1414, 8BH7|1|a|G|1516
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8BH7|1|a|G|932
8BH7|1|a|A|933
8BH7|1|a|C|934
8BH7|1|a|G|935
8BH7|1|a|G|936
8BH7|1|a|G|937
*
8BH7|1|a|U|1401
8BH7|1|a|U|1402
8BH7|1|a|G|1403
8BH7|1|a|U|1404
8BH7|1|a|A|1405
8BH7|1|a|C|1406
8BH7|1|a|A|1407
8BH7|1|a|C|1408
8BH7|1|a|A|1409
8BH7|1|a|C|1410
8BH7|1|a|C|1411
8BH7|1|a|G|1412
8BH7|1|a|C|1413
8BH7|1|a|C|1414
8BH7|1|a|C|1415
8BH7|1|a|G|1416
8BH7|1|a|U|1417
8BH7|1|a|C|1418
8BH7|1|a|A|1419
8BH7|1|a|C|1420
*
8BH7|1|a|G|1503
8BH7|1|a|A|1504
8BH7|1|a|A|1505
8BH7|1|a|G|1506
8BH7|1|a|U|1507
8BH7|1|a|C|1508
8BH7|1|a|G|1509
8BH7|1|a|U|1510
8BH7|1|a|A|1511
8BH7|1|a|A|1512
8BH7|1|a|C|1513
8BH7|1|a|A|1514
8BH7|1|a|A|1515
8BH7|1|a|G|1516
8BH7|1|a|G|1517
8BH7|1|a|U|1518
8BH7|1|a|A|1519
8BH7|1|a|G|1520
*
8BH7|1|a|C|1539
8BH7|1|a|U|1540
8BH7|1|a|G|1541
8BH7|1|a|G|1542
8BH7|1|a|A|1543
8BH7|1|a|U|1544

Current chains

Chain a: 16S ribosomal RNA

Nearby chains

Chain A: Ribosome maturation factor RimP
Chain e: 30S ribosomal protein S5

J4_8BH7_006