J4_8BHF_001
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGG*CGU*AUGGACA*UU
- Length
- 16 nucleotides
- Bulged bases
- 8BHF|1|21|U|8, 8BHF|1|21|A|47, 8BHF|1|21|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_001 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2023
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8BHF|1|21|A|7
8BHF|1|21|U|8
8BHF|1|21|G|9
8BHF|1|21|G|10
*
8BHF|1|21|C|25
8BHF|1|21|G|26
8BHF|1|21|U|27
*
8BHF|1|21|A|43
8BHF|1|21|U|44
8BHF|1|21|G|45
8BHF|1|21|G|46
8BHF|1|21|A|47
8BHF|1|21|C|48
8BHF|1|21|A|49
*
8BHF|1|21|U|65
8BHF|1|21|U|66
Current chains
- Chain 21
- P-site tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain n1
- CCR4-NOT transcription complex subunit 3
- Chain r3
- Ribosomal protein L10
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