J4_8BHF_003

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8BHF|1|A2|C|216, 8BHF|1|A2|C|217, 8BHF|1|A2|A|218, 8BHF|1|A2|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|196
8BHF|1|A2|A|197
8BHF|1|A2|A|198
8BHF|1|A2|G|199
*
8BHF|1|A2|C|215
8BHF|1|A2|C|216
8BHF|1|A2|C|217
8BHF|1|A2|A|218
8BHF|1|A2|G|219
8BHF|1|A2|C|220
8BHF|1|A2|C|221
8BHF|1|A2|C|222
*
8BHF|1|A2|G|226
8BHF|1|A2|A|227
8BHF|1|A2|C|228
*
8BHF|1|A2|G|240
8BHF|1|A2|G|241
8BHF|1|A2|U|242
8BHF|1|A2|A|243
8BHF|1|A2|G|244

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain L1

Ribosomal protein L26

Chain l3

60S ribosomal protein L4