J4_8BHF_004

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAGC*GUGCGCCGCGCU*GCGCACGGGG

Length

32 nucleotides

Bulged bases

8BHF|1|A2|C|974, 8BHF|1|A2|C|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|713
8BHF|1|A2|C|714
*
8BHF|1|A2|G|956
8BHF|1|A2|A|957
8BHF|1|A2|G|958
8BHF|1|A2|G|959
8BHF|1|A2|G|960
8BHF|1|A2|A|961
8BHF|1|A2|G|962
8BHF|1|A2|C|963
*
8BHF|1|A2|G|971
8BHF|1|A2|U|972
8BHF|1|A2|G|973
8BHF|1|A2|C|974
8BHF|1|A2|G|975
8BHF|1|A2|C|976
8BHF|1|A2|C|977
8BHF|1|A2|G|978
8BHF|1|A2|C|979
8BHF|1|A2|G|980
8BHF|1|A2|C|981
8BHF|1|A2|U|982
*
8BHF|1|A2|G|1273
8BHF|1|A2|C|1274
8BHF|1|A2|G|1275
8BHF|1|A2|C|1276
8BHF|1|A2|A|1277
8BHF|1|A2|C|1278
8BHF|1|A2|G|1279
8BHF|1|A2|G|1280
8BHF|1|A2|G|1281
8BHF|1|A2|G|1282

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein L32

Chain l3

60S ribosomal protein L4

Chain n3

60S ribosomal protein L6

Chain o3

60S ribosomal protein L7