J4_8BHF_007

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8BHF|1|A2|A|2699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|G|2621
8BHF|1|A2|G|2622
*
8BHF|1|A2|U|2640
8BHF|1|A2|G|2641
8BHF|1|A2|U|2642
8BHF|1|A2|G|2643
8BHF|1|A2|A|2644
8BHF|1|A2|A|2645
*
8BHF|1|A2|U|2695
8BHF|1|A2|G|2696
8BHF|1|A2|G|2697
8BHF|1|A2|A|2698
8BHF|1|A2|A|2699
8BHF|1|A2|A|2700
8BHF|1|A2|G|2701
*
8BHF|1|A2|U|2721
8BHF|1|A2|C|2722

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain H1

60S ribosomal protein L22

Chain T1

60S ribosomal protein L34

Chain X1

60S ribosomal protein L38