J4_8BHF_008
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0804
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BHF|1|A2|G|3629
8BHF|1|A2|A|3630
8BHF|1|A2|C|3631
8BHF|1|A2|U|3632
8BHF|1|A2|G|3633
*
8BHF|1|A2|C|3645
8BHF|1|A2|A|3646
8BHF|1|A2|A|3647
8BHF|1|A2|A|3648
8BHF|1|A2|G|3649
*
8BHF|1|A2|U|3685
8BHF|1|A2|G|3686
8BHF|1|A2|A|3687
8BHF|1|A2|U|3688
8BHF|1|A2|U|3689
*
8BHF|1|A2|A|3816
8BHF|1|A2|U|3817
8BHF|1|A2|G|3818
8BHF|1|A2|A|3819
8BHF|1|A2|A|3820
8BHF|1|A2|C|3821
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain a1
- 60S ribosomal protein L41
- Chain c1
- 60S ribosomal protein L37a
- Chain j3
- 60S ribosomal protein L8
Coloring options: