J4_8BHF_009
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8BHF|1|A2|U|3813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1039
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|C|3691
8BHF|1|A2|U|3692
8BHF|1|A2|G|3693
*
8BHF|1|A2|C|3747
8BHF|1|A2|G|3748
*
8BHF|1|A2|C|3766
8BHF|1|A2|U|3767
8BHF|1|A2|U|3768
8BHF|1|A2|A|3769
8BHF|1|A2|A|3770
8BHF|1|A2|G|3771
8BHF|1|A2|G|3772
8BHF|1|A2|U|3773
8BHF|1|A2|A|3774
8BHF|1|A2|G|3775
*
8BHF|1|A2|U|3809
8BHF|1|A2|G|3810
8BHF|1|A2|A|3811
8BHF|1|A2|A|3812
8BHF|1|A2|U|3813
8BHF|1|A2|G|3814
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain a1
- 60S ribosomal protein L41
- Chain j3
- 60S ribosomal protein L8
- Chain n1
- CCR4-NOT transcription complex subunit 3
Coloring options: