J4_8BHF_010

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8BHF|1|A2|A|4220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|4217
8BHF|1|A2|U|4218
8BHF|1|A2|A|4219
8BHF|1|A2|A|4220
8BHF|1|A2|G|4221
*
8BHF|1|A2|U|4275
8BHF|1|A2|U|4276
8BHF|1|A2|G|4277
*
8BHF|1|A2|C|4304
8BHF|1|A2|C|4305
*
8BHF|1|A2|G|4314
8BHF|1|A2|G|4315
8BHF|1|A2|G|4316

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L21

Chain b1

Ribosomal protein L36a like

Chain m3

60S ribosomal protein L5