J4_8BHF_013
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8BHF|1|A3|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_013 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1615
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BHF|1|A3|C|98
8BHF|1|A3|A|99
8BHF|1|A3|U|100
8BHF|1|A3|U|101
8BHF|1|A3|A|102
8BHF|1|A3|A|103
8BHF|1|A3|A|104
8BHF|1|A3|U|105
8BHF|1|A3|C|106
*
8BHF|1|A3|G|355
8BHF|1|A3|C|356
8BHF|1|A3|C|357
*
8BHF|1|A3|G|405
8BHF|1|A3|U|406
8BHF|1|A3|G|407
8BHF|1|A3|A|408
8BHF|1|A3|C|409
*
8BHF|1|A3|G|431
8BHF|1|A3|G|432
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S4
- Chain J3
- 40S ribosomal protein S8
- Chain M3
- 40S ribosomal protein S11
- Chain Y3
- Ribosomal protein S23
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