J4_8BHJ_011

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHJ_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1334

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BHJ|1|0|G|2643
8BHJ|1|0|G|2644
8BHJ|1|0|G|2645
8BHJ|1|0|C|2646
*
8BHJ|1|0|G|2674
8BHJ|1|0|A|2675
8BHJ|1|0|C|2676
*
8BHJ|1|0|G|2731
8BHJ|1|0|G|2732
8BHJ|1|0|A|2733
8BHJ|1|0|A|2734
8BHJ|1|0|G|2735
*
8BHJ|1|0|U|2769
8BHJ|1|0|G|2770
8BHJ|1|0|C|2771

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14