J4_8BHJ_015
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- G(4SU)GG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 8BHJ|1|4|4SU|7, 8BHJ|1|4|U|47, 8BHJ|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHJ_015 not in the Motif Atlas
- Homologous match to J4_1QF6_001
- Geometric discrepancy: 0.3377
- The information below is about J4_1QF6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BHJ|1|4|G|6
8BHJ|1|4|4SU|7
8BHJ|1|4|G|8
8BHJ|1|4|G|9
*
8BHJ|1|4|C|25
8BHJ|1|4|G|26
8BHJ|1|4|U|27
8BHJ|1|4|C|28
*
8BHJ|1|4|G|42
8BHJ|1|4|A|43
8BHJ|1|4|A|44
8BHJ|1|4|G|45
8BHJ|1|4|G|46
8BHJ|1|4|U|47
8BHJ|1|4|C|48
8BHJ|1|4|G|49
*
8BHJ|1|4|C|65
8BHJ|1|4|C|66
Current chains
- Chain 4
- Deacylated P-site tRNA(fMet)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain J
- 50S ribosomal protein L16
- Chain q
- 30S ribosomal protein S13
Coloring options: