J4_8BHN_001

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BHN|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHN_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1369

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BHN|1|0|C|268
8BHN|1|0|C|269
*
8BHN|1|0|G|370
8BHN|1|0|A|371
8BHN|1|0|G|372
8BHN|1|0|U|373
8BHN|1|0|A|374
8BHN|1|0|G|375
*
8BHN|1|0|U|399
8BHN|1|0|G|400
8BHN|1|0|A|401
8BHN|1|0|A|402
8BHN|1|0|U|403
8BHN|1|0|A|404
8BHN|1|0|U|405
8BHN|1|0|G|406
*
8BHN|1|0|C|421
8BHN|1|0|A|422
8BHN|1|0|A|423
8BHN|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28