J4_8BHP_013

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8BHP|1|2|C|183, 8BHP|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHP_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2045

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BHP|1|2|G|142
8BHP|1|2|A|143
8BHP|1|2|G|144
*
8BHP|1|2|C|178
8BHP|1|2|A|179
8BHP|1|2|U|180
8BHP|1|2|A|181
8BHP|1|2|A|182
8BHP|1|2|C|183
8BHP|1|2|G|184
*
8BHP|1|2|C|193
8BHP|1|2|C|194
8BHP|1|2|A|195
8BHP|1|2|A|196
8BHP|1|2|A|197
8BHP|1|2|G|198
*
8BHP|1|2|U|219
8BHP|1|2|G|220
8BHP|1|2|C|221

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20