J4_8BIL_001

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BIL|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1073

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BIL|1|0|C|268
8BIL|1|0|C|269
*
8BIL|1|0|G|370
8BIL|1|0|A|371
8BIL|1|0|G|372
8BIL|1|0|U|373
8BIL|1|0|A|374
8BIL|1|0|G|375
*
8BIL|1|0|U|399
8BIL|1|0|G|400
8BIL|1|0|A|401
8BIL|1|0|A|402
8BIL|1|0|U|403
8BIL|1|0|A|404
8BIL|1|0|U|405
8BIL|1|0|G|406
*
8BIL|1|0|C|421
8BIL|1|0|A|422
8BIL|1|0|A|423
8BIL|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28