J4_8BIL_004

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8BIL|1|0|G|1271, 8BIL|1|0|A|1272, 8BIL|1|0|U|1273, 8BIL|1|0|A|1275, 8BIL|1|0|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1307

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8BIL|1|0|C|1270
8BIL|1|0|G|1271
8BIL|1|0|A|1272
8BIL|1|0|U|1273
8BIL|1|0|A|1274
8BIL|1|0|A|1275
8BIL|1|0|A|1276
*
8BIL|1|0|U|1294
8BIL|1|0|C|1295
*
8BIL|1|0|G|1645
8BIL|1|0|C|1646
8BIL|1|0|U|1647
8BIL|1|0|U|1648
*
8BIL|1|0|A|2009
8BIL|1|0|G|2010

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32