J4_8BIL_013

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8BIL|1|2|C|183, 8BIL|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1376

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BIL|1|2|G|142
8BIL|1|2|A|143
8BIL|1|2|G|144
*
8BIL|1|2|C|178
8BIL|1|2|A|179
8BIL|1|2|U|180
8BIL|1|2|A|181
8BIL|1|2|A|182
8BIL|1|2|C|183
8BIL|1|2|G|184
*
8BIL|1|2|C|193
8BIL|1|2|C|194
8BIL|1|2|A|195
8BIL|1|2|A|196
8BIL|1|2|A|197
8BIL|1|2|G|198
*
8BIL|1|2|U|219
8BIL|1|2|G|220
8BIL|1|2|C|221

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20