J4_8BIM_001

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8BIM|1|0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1081

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|C|268
8BIM|1|0|C|269
*
8BIM|1|0|G|370
8BIM|1|0|A|371
8BIM|1|0|G|372
8BIM|1|0|U|373
8BIM|1|0|A|374
8BIM|1|0|G|375
*
8BIM|1|0|U|399
8BIM|1|0|G|400
8BIM|1|0|A|401
8BIM|1|0|A|402
8BIM|1|0|U|403
8BIM|1|0|A|404
8BIM|1|0|U|405
8BIM|1|0|G|406
*
8BIM|1|0|C|421
8BIM|1|0|A|422
8BIM|1|0|A|423
8BIM|1|0|G|424

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28