J4_8BIM_004

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8BIM|1|0|G|1271, 8BIM|1|0|A|1272, 8BIM|1|0|U|1273, 8BIM|1|0|A|1275, 8BIM|1|0|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1306

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8BIM|1|0|C|1270
8BIM|1|0|G|1271
8BIM|1|0|A|1272
8BIM|1|0|U|1273
8BIM|1|0|A|1274
8BIM|1|0|A|1275
8BIM|1|0|A|1276
*
8BIM|1|0|U|1294
8BIM|1|0|C|1295
*
8BIM|1|0|G|1645
8BIM|1|0|C|1646
8BIM|1|0|U|1647
8BIM|1|0|U|1648
*
8BIM|1|0|A|2009
8BIM|1|0|G|2010

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32