J4_8BIM_011

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1126

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BIM|1|0|G|2643
8BIM|1|0|G|2644
8BIM|1|0|G|2645
8BIM|1|0|C|2646
*
8BIM|1|0|G|2674
8BIM|1|0|A|2675
8BIM|1|0|C|2676
*
8BIM|1|0|G|2731
8BIM|1|0|G|2732
8BIM|1|0|A|2733
8BIM|1|0|A|2734
8BIM|1|0|G|2735
*
8BIM|1|0|U|2769
8BIM|1|0|G|2770
8BIM|1|0|C|2771

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14