J4_8BIM_012

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8BIM|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2324

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|G|115
8BIM|1|2|A|116
8BIM|1|2|G|117
8BIM|1|2|U|118
8BIM|1|2|A|119
8BIM|1|2|A|120
8BIM|1|2|U|121
8BIM|1|2|G|122
*
8BIM|1|2|U|239
8BIM|1|2|G|240
*
8BIM|1|2|C|286
8BIM|1|2|U|287
8BIM|1|2|A|288
8BIM|1|2|G|289
*
8BIM|1|2|C|311
8BIM|1|2|C|312

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17